Genomic Databases for Tomato
نویسندگان
چکیده
منابع مشابه
Genomic Databases for Crop Improvement
Genomics is playing an increasing role in plant breeding and this is accelerating with the rapid advances in genome technology. Translating the vast abundance of data being produced by genome technologies requires the development of custom bioinformatics tools and advanced databases. These range from large generic databases which hold specific data types for a broad range of species, to careful...
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Advances in DNA sequencing technology will soon result in databases of thousands of genomes. Within a species, individuals’ genomes are almost exact copies of each other; e.g., any two human genomes are 99.9% the same. Relative Lempel-Ziv (RLZ) compression takes advantage of this property: it stores the first genome uncompressed or as an FM-index, then compresses the other genomes with a varian...
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Genomic sequence databases are widely used by molecular biologists for homology searching Amino acid and nucleotide databases are increasing in size exponentially and mean sequence lengths are also increasing In searching such databases it is desirable to use heuristics to perform computationally intensive local alignments on selected sequences only and to reduce the costs of the alignments tha...
متن کاملIndexing Genomic Databases for Fast Homology Searching
Genomic sequence databases has been widely used by molecular biologists for homology searching. However, as amino acid and nucleotide databases are growing in size at an alarming rate, traditional brute force approach of comparing a query sequence against each of the database sequences is becoming prohibitively expensive. In this paper, we re-examine the problem of searching for homology in lar...
متن کاملTomato Genomic Resources Database: An Integrated Repository of Useful Tomato Genomic Information for Basic and Applied Research
Tomato Genomic Resources Database (TGRD) allows interactive browsing of tomato genes, micro RNAs, simple sequence repeats (SSRs), important quantitative trait loci and Tomato-EXPEN 2000 genetic map altogether or separately along twelve chromosomes of tomato in a single window. The database is created using sequence of the cultivar Heinz 1706. High quality single nucleotide polymorphic (SNP) sit...
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ژورنال
عنوان ژورنال: Plant Biotechnology
سال: 2007
ISSN: 1347-6114,1342-4580
DOI: 10.5511/plantbiotechnology.24.17